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Before all downstream analyses, duplicate reads were removed using the MarkDuplicates command in picard-tools version 2.26.11 ( From the ChIP-seq, CPM values in the genome tracks were calculated by subtracting those in the input tracks as the background value for each cell

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Devarbhavi H, Raj S, Aradya V, Rangegowda V, Veeranna G, Singh R, Reddy V, Patil M